Below are all the workshop presentations available for download.
| Presentation | Download |
|---|---|
| Day 1 | |
| Introduction to Git and Markdown in VSCode | Presentation0_git-vscode-markdown.pdf |
| Training Overview | Presentation1_TrainingOverviewVCM.html |
| Computer OS | Presentation2_ComputerOS.pdf |
| Introduction to BASH | Presentation3_IntroBASH-FINAL.pdf |
| BASH command cheat sheet | Bash_Command_EncyclopediaV2.pdf |
| Day 2 | |
| Bioinformatics Programming | Presentation4_BifxProgramming.pdf |
| Computer Environments | Presentation5_APHL_computer_environments.pdf |
| Docker & Common Software | Presentation6_container_registries.html |
| Day 3 | |
| NGS Pipelines | Presentation7_NGSPipelines.pdf |
| Day 4 | |
| Phylogenetics | phylogenetics.html |
| Genomic Epidemiology | Genomic_Epi.pdf |
| Train the Trainer | Train_the_trainer.pdf |
| Day 5 | |
| Common Problems | Presentation10_QMS_CommonProblems.html |
| Introduction to Quarto | Presentation11_Intro_Quarto.pdf |
| Advanced Reporting | Presentation18b_Advanced_Reporting.html |