1. Understand basic computer architecture and operating systems
- Training Overview
- Computer Basics
- Computer Setup (WSL)
- Computer Environments
- Computer Environments Practical
- Containers and Registries
2. Execute command-line operations
3. Inspect genome assembly
4. Perform informatic analyses (e.g., alignment, phylogenetics, variants) of influenza sequences
5. Generate genomic surveillance reports on circulating subtypes and clades
6. Automate influenza genomic data processing
- Intro to Bioinformatics Programming
- Bioinformatics Programming Exercises
- Workflow Pipelines
- Quality Management Systems
7. Submit timely, high-quality data to GISAID and NCBI
