All functions

borealpox

Chain size data for borealpox

compute_likelihood_surface()

Computes NBBP likelihood surface for given data at given grid

default_res

Default shape/rate for prior on r_eff

default_sisd

Default scale for prior on dispersion

dnbbp() pnbbp() rnbbp()

Final outbreak size for negative binomial branching process

fit_nbbp_homogenous_bayes()

Fit a negative binomial branching process model with Bayesian inference via rstan

fit_nbbp_homogenous_ml()

Fit a negative binomial branching process model with maximum likelihood inference via rstan

measles_us_97 measles_canada_98

Measles chain size data used by Blumberg et al. (2014)

mers_pre_june mers_post_june

MERS-CoV chain size data used by Blumberg et al. (2014)

nb_param_convert()

Negative binomial parameterization conversion

nbbp_ep()

Extinction probability for negative binomial branching process

pneumonic_plague

Chain size data for pneumonic plague

prior_predictive

Prior and prior predictive distributions

sbc_quants

Ancillary results from high-level validation

sbc_quants

High-level validation results

sim_based_testing

High-level performance results in simulations

table_add_1d()

Addition of two 1-D base::table objects