Illumina fastq reads less than 70 bases error-handling
v1.1.3
MIRA version displayed in app and in IRMA summary table (along with config)
IRMA version bump 1.1.4
fixed pulp version
Turn off padding for S gene module
Packaged fastq in irma .tar.gz
Error fixes for single-sample runs
v1.1.2
Whole-Genome SC2 Nanopore module
Illumina 2x75 support for Flu and SC2 whole-genome modules
Java instability fixed
New Version Checking
Lab protocols published on documentation website
Docker compose steps added to quickstart on documentation website
Quality control checks for S-gene specific metrics added to Whole-Genome SC2 modules
IRMA container V1.1.1
Final sorted, amended .bams included in tarball. This is in addition to the F1 .bam, which is the first iteration of alignment before reference editing.
v1.1.1
Pandas version –> 1.1.0
Mac docs updated to show Rosetta usage in Docker Desktop
More thorough error and status messaging during assembly
v1.1.0
Illumina sequencing for WGS SC2 and Flu
Auto-samplesheet building
Samplesheet download/upload functionality
Button added to refresh run listing
Button added to download failed fastas
Downloaded fasta for FLU now changes the flu segment numbers to the gene name
Allow numeric samplenames, and allow “-” in sample names
Toss broken reads for ONT fastqs
Return only closer Flu B reference in amino acid variants table
Better error handling for empty/failed nanopore barcodes
Indel table filtered to >20%, Minor variant table filtered to >5%
