Tutorials

This section contains tutorials that demonstrate how to use the pyrenew package. The source code for the tutorials can be found in the project repository: CDCgov/multisignal-epi-inference.

• Getting started with pyrenew
  • The fundamentals
  • ‘Hello world’ model
  • Architecture of pyrenew
• Fitting a Hospital Admissions-only Model
  • Model definition
  • Data processing
  • Building the model
  • Fitting the model
  • Padding the model
  • Round 2: Incorporating day-of-the-week effects
• Pyrenew demo
• Extending pyrenew
  • The expected outcome
  • Pyrenew’s random variable class
• Periodic effects and broadcasting
  • Repeated units
  • Repeated sequences (tiling)