Package index • RtGam

All functions

RtGam(): Fit a generalized additive model to incident cases

check_diagnostics(): Check quantitative diagnostics from a fitted RtGam model

penalty_dim_heuristic(): Propose penalty basis dimension from the number of distinct dates

plot(<RtGam>): Plot method for RtGam fits

predict(<RtGam>): Draw posterior samples from a fitted RtGam model

print(<RtGam>): Print an RtGam object

simulate_sir(): Simulate an SIR model with specified time-varying reproduction number

sir_gt_pmf: Generation interval corresponding to the sample stochastic_sir_rt dataset

smooth_dim_heuristic(): Propose total smoothing basis dimension from the number of data points

stochastic_sir_rt: Synthetic dataset of stochastic SIR system with known Rt

truncate_and_renormalize(): Left-truncate and renormalize to a PMF