Changelog

New Features

The Rnssp R package has a new hexsticker.
Rnssp webassembly build now available for webr and shinylive.
Custom built shiny applications from the Rnssp-shiny-apps Github repository are seamlessly integrated to Rnssp.
New function list_apps() lists available custom-built shiny apps from the Rnssp-shiny-apps Github repository.
New addin added for RStudio users to run Rnssp shiny apps (run_app_gui()).

The deprecated $get_api_tsgraph() method has been removed.
The get_api_tsgraph function has been removed as a consequence of the removal of the deprecated $get_api_tsgraph method.

The Credentials class has been updated. It now interfaces with API services no authorization requirement.
The get_essence_data() function has been upgraded to accommodate the table builder ESSENCE API.
The change_dates() function has been upgraded to fix flip-flopping start and end date values (#13)
The assertive.types package dependency has been replaced by the assertions package (#14).
The webscrape_icd() function has been fixed to webscrape 2024 ICD10 code sets.

New function create_profile() added as a wrapper to the $new() method defined in the Credentials class.
New function get_essence_data() added to specifically pull data using the NSSP-ESSENCE API.
Negative binomial detection algorithm alert_nbinom() added for weekly time series of counts spanning multiple years.
run_app() has been added as a utility to run embedded shiny apps.
New Token class added for API services token use. The Token class has the same methods as the Credentials class.
New function create_token_profile() added as a wrapper to the $new() method defined in the Token class.
Rnssp detects new version and suggests package upgrade.

New test test-create_profile.R added for create_profile().
New test test-create_token_profile.R added for create_token_profile().
New test test-alert_nbinom.R added for alert_nbinom().
New test test-alert_serfling.R added for alert_serfling().
New test test-get_essence_data.R added for get_essence_data().
New test test-get_api_graph.R added for get_api_graph().
New test test-get_api_tsgraph.R added for get_api_tsgraph().
slider package added as a dependency.
lubridate package added as a dependency.
Deprecated alert_mar() function has been removed.
add_rmd_template() has been improved with additional arguments and better error handling.
remove_rmd_template() has been improved with additional arguments and better error handling.
Rnssp:::add_rmd_template_gui() has been improved with additional arguments and better error handling.
Rnssp:::remove_rmd_template_gui() has been improved with additional arguments and better error handling.
$get_api_response() has been improved and now prints HTTP status code.
$get_api_tsgraph() has been improved with additional arguments and now prints HTTP status code.
The $get_api_tsgraph() method has been deprecated and will be removed in the next release of Rnssp.
New method $get_api_graph() has been added as a replacement to the $get_api_tsgraph().

Abstracted critical user credentials from the $get_api_ts_graph() method.
Fix the get_api_tsgraph() function which was previously returning an API response object.

New function get_api_response() added as a wrapper to the $get_api_response() method defined in the Credentials class.
New function get_api_data() added as a wrapper to the $get_api_data() method defined in the Credentials class.
New function get_api_tsgraph() added as a wrapper to the $get_api_tsgraph() method defined in the Credentials class.
Regression/EWMA Switch algorithm alert_switch() added for anomaly detection.
Adaptive Multiple Regression algorithm alert_regression() added for anomaly detection.
Farrington Temporal Detector algorithm alert_farrington() added for weekly time series of counts spanning multiple years.
ICD Code Web Scraper function webscrape_icd() added to web scrape ICD discharge diagnosis code sets from the CDC FTP server (for ICD-10) or CMS website (for ICD-9).
The following Addins have been added for RStudio users:
- Create User Profile via a Graphical User Interface (Rnssp:::create_user_profile_gui())
- Create a User Profile with a script skeleton (Rnssp:::create_user_profile())
- List available Rnssp templates (list_templates())
- Add or Update Rnssp templates (Rnssp:::add_rmd_template_gui())
- Remove Rnssp templates (Rnssp:::remove_rmd_template_gui())
- Open Rnssp templates online documentation (Rnssp:::rnssp_templates_manual())
- Open Rnssp package online documentation (Rnssp:::rnssp_manual())

add_rmd_template() no longer has a template_name argument. The argument template_name has been replaced by template which is the first argument in the function call.
New test test-alert_farrington.R added for alert_farrington().
New test test-alert_regression.R added for alert_regression().
New test test-alert_switch.R added for alert_switch().
New test test-add_rmd_template.R added for add_rmd_template().
New test test-remove_rmd_template.R added for remove_rmd_template().
New test test-get_api_data.R added for the get_api_data() function.
New test test-get_api_response.R added for the get_api_response() function.
New test test-get_api_tsgraph.R added for the get_api_tsgraph() function.
New test test-get_api_data_method.R added for the $get_api_data() method.
New test test-get_api_response_method.R added for the $get_api_response() method.
New test test-get_api_tsgraph_method.R added for the $get_api_tsgraph() method.
New test test-webscrape_icd.R added for webscrape_icd()
Added shapefile for US Hospital Service Area (HSA) Shapefile (hsa_sf)
Added Rnssp stopwords (rnssp_stopwords)
alert_mar() is depecrated. Use alert_regression instead.
Test test_alert_mar.R has been removed for alert_mar().
Regression models in alert_regression() are fit using lm.fit() instead of lm() to reduce computation time associated with extraneous computations made by lm().
New vignette added to demonstrate the use of Rnssp addins.

All vignettes can be browsed with the Rnssp_vignettes() function
list_templates() lists available templates from the Rnssp-rmd-templates Github repository
add_rmd_template() can now add RMarkdown templates from Rnssp-rmd-templates Github repository
add_rmd_template() can now run in non-interactive mode
remove_rmd_template() removes an existing RMarkdown template from an existing Rnssp package template list.
change_dates() changes the start and/or end dates in an ESSENCE API URL

Abstracted critical user credentials from response object.
The $get_api_data() method has been extended to accept further arguments to parse CSV files.