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DynODE 2025.06.26.1a documentation
dynode
config
bins
AgeBin
Bin
DiscretizedPositiveIntBin
WaneBin
deterministic_parameter
DeterministicParameter
dimension
Dimension
FullStratifiedImmuneHistoryDimension
ImmuneHistoryDimension
LastStrainImmuneHistoryDimension
VaccinationDimension
WaneDimension
initializer
Initializer
params
Params
SolverParams
TransmissionParams
placeholder_sample
PlaceholderSample
dynode.config.placeholder_sample.SamplePlaceholderError
simulation_config
Compartment
SimulationConfig
simulation_date
dynode.config.simulation_date.get_dynode_init_date_flag
dynode.config.simulation_date.set_dynode_init_date_flag
dynode.config.simulation_date.simulation_day
strains
Strain
infer
checkpointing
dynode.infer.checkpointing.checkpoint_compartment_sizes
inference
InferenceProcess
MCMCProcess
SVIProcess
sample
dynode.infer.sample.resolve_deterministic
dynode.infer.sample.sample_distributions
dynode.infer.sample.sample_then_resolve
simulation
odes
dynode.simulation.odes.build_saveat
dynode.simulation.odes.simulate
AbstractODEParams
typing
typing
utils
custom_log_formatter
CustomLogFormatter
datetime_utils
dynode.utils.datetime_utils.date_to_epi_week
dynode.utils.datetime_utils.date_to_sim_day
dynode.utils.datetime_utils.sim_day_to_date
dynode.utils.datetime_utils.sim_day_to_epiweek
log
dynode.utils.log.use_logging
log_decorator
splines
dynode.utils.splines.base_equation
dynode.utils.splines.conditional_knots
dynode.utils.splines.evaluate_cubic_spline
utils
dynode.utils.utils.drop_keys_with_substring
dynode.utils.utils.flatten_list_parameters
dynode.utils.utils.identify_distribution_indexes
dynode.utils.utils.vectorize_objects
vis_utils
dynode.utils.vis_utils.plot_checkpoint_inference_correlation_pairs
dynode.utils.vis_utils.plot_mcmc_chains
dynode.utils.vis_utils.plot_model_overview_subplot_matplotlib
dynode.utils.vis_utils.plot_prior_distributions
dynode.utils.vis_utils.plot_violin_plots
dynode.utils.vis_utils.VisualizationError
.rst
.pdf
typing
typing
#
Module for declaring types to be used within DynODE config files.