Skip to main content

Influenza Division Resources

A curated, searchable collection of CDC-cleared documents, protocols, and tools from the CDC Influenza Division. Browse by category or use the search to find resources across all documents, including full-text content from PDFs and linked pages.

Influenza virion illustration

Recent Resources

Seasonal Flu Sequence References

Curated GISAID EPI_SET genetic sequence references for seasonal influenza (H3N2, H1N1pdm09, B Victoria), including Co...

Datasets

MiSeq Library Loading Preparation

Standard operating procedure for preparing and loading sequencing libraries onto the Illumina MiSeq platform for infl...

Laboratory

zoe

Zoe provides both broad and highly specialized implementations for bioinformatics, focusing on common data formats an...

Software

udf-bioutils

Bioinformatics related user-defined functions for Cloudera Impala.

Software

sswsort

A simple tool for classifying gene segments.

Software

seqsender

Automated pipeline to generate FTP files and manage submission of sequence data to public repositories including NCBI...

Software