Package index • hubhelpr

All functions

assert_data_up_to_date(): Checks latency of input data.
check_authorized_users(): Check if a user is authorized to modify model directories.
check_changes_for_autoapproval(): Check changed files for auto-approval eligibility.
check_hospital_reporting_latency(): Check hospital reporting data latency and completeness.
ensemble_by_target(): Create an ensemble forecast for a single target
excluded_locations: Two digits FIPS codes for locations excluded from Hubs' target data.
flatten_task(): Transform a modeling task represented as a nested list to a single data frame
flatten_task_list(): Transform a group of modeling task represented as a list of nested lists into a single data frame.
generate_hub_baseline(): Generate hub baseline forecasts for a given disease and reference date.
generate_hub_ensemble(): Generate hub ensemble forecasts for a given disease and reference date.
generate_oracle_output(): Generate and save oracle output for the Hub
generate_webtext_block(): Generate forecast hub webpage text block.
get_disease_name(): Get display name for a given disease.
get_hub_name(): Get hub display name for a given disease.
get_hub_repo_name(): Get GitHub repository name for a given disease.
get_hub_repo_url(): Get GitHub repository URL for a given disease.
get_hubverse_format_nhsn_data(): Get and format NHSN data for a given disease.
get_hubverse_format_nssp_data(): Get and format NSSP data for a given disease.
get_nhsn_col_name(): Get NHSN column name for a given disease
get_nssp_col_name(): Get NSSP column name for a given disease
get_target_data_type(): Get target data type from full target string.
get_target_label(): Get human-readable label for a target.
get_unique_hub_targets(): Get unique targets from hub time-series data.
included_locations: Two digits FIPS codes for locations included in Hubs' target data.
is_ed_target(): Check if target is an emergency department visits proportion.
is_hosp_target(): Check if target is a hospital admissions count.
make_baseline_forecast(): Create a hub formatted baseline forecast for a single target
population_data: Population Data by Location
summarize_ref_date_forecasts(): Summarize forecast hub data for a specific reference date.
update_hub_target_data(): Update hub target data.
write_ref_date_summary(): Write forecast summary to disk.
write_ref_date_summary_all(): Write all-models forecast summary to disk.
write_ref_date_summary_ens(): Write ensemble forecast summary to disk.
write_viz_target_data(): Write target data for visualization to disk.
write_webtext(): Generate and save text content for forecast hub visualization webpage.