Get and process target data for a given Hub. — update_hub_target

This function pulls, formats and save NHSN and NSSP data for use in the Hub.

Usage

update_hub_target_data(
  base_hub_path,
  disease,
  as_of = lubridate::today(),
  nhsn_first_weekending_date = lubridate::as_date("2024-11-09"),
  included_locations = hubhelpr::included_locations,
  legacy_file = FALSE,
  nssp_update_local = FALSE
)

Arguments

base_hub_path: Path to the base hub directory.
disease: Disease name ("covid" or "rsv").
as_of: As-of date of the data pull. Default is the system date as determined by lubridate::today().
nhsn_first_weekending_date: First week-ending date to include for the NHSN dataset. Default value is "2024-11-09".
included_locations: Vector of location codes to include in the output. Default value hubhelpr::included_locations.
legacy_file: Logical. Whether to write legacy CSV output (default: FALSE).
nssp_update_local: Logical. Whether to update NSSP data from local file auxiliary-data/latest.csv (default: FALSE).

Value

Writes time-series.parquet and optionally legacy CSV target data files to the target-data directory in the hub.