Process posterior samples from a Stan fit object (raw draws).
sample_processing_functions.RdExtracts raw posterior samples from a Stan fit object and post-processes
them, including merging with a fact table and standardizing the parameter
names. If calling process_quantiles() the 50% and 95% intervals are
returned in {tidybayes} format.
Usage
process_samples(fit, geo_value, model, disease)
process_quantiles(fit, geo_value, model, disease, quantile_width)Arguments
- fit
An EpiNow2 fit object with posterior estimates.
- geo_value
An uppercase, two-character string specifying the geographic value, usually a state or
"US"for national data.- model
A string specifying the model to be used.
- disease
A string specifying the disease being modeled. One of
"COVID-19"or"Influenza".- quantile_width
A vector of numeric values representing the desired quantiles. Passed to
tidybayes::median_qi().
See also
Other write_output:
write_model_outputs(),
write_output_dir_structure()