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Overview

The purpose of the SaviR package is to collate data from various publicly available Coronavirus 2019 (COVID-19) data sources for analysis and visualization. This package is divided into two main sections: COVID Analytical Datasets (COVAD) and COVID Data Visualizations (COVIS).

Data Sources

Note: Please refer to original data sources to ensure data accuracy as data models could have changed

Installation and Package Load

You can install the released version of SaviR from Github with:

devtools::install_github("CDCgov/SaviR")

You can also use the code above to update your SaviR package as needed. When loading SaviR, be sure to load in this package last.

COVAD - COVID Analytical Datasets

Metadata Functions Get Functions Calculation Functions
get_onetable get_combined_table calc_add_risk
get_country_coords get_covid_df calc_vax_carryforward
get_vax_dates get_testing
get_vax_manufacturers get_testing_long
get_vax
get_vax_by_type
get_hospdata
get_gdeltnews
  • Metadata is stored in this package and can be called:
metadata <- onetable  
country_coordinates <- country_coords  

COVIS - COVID Visualizations

Plot Functions Map Functions Table Functions
plot_epicurve map_template table_10mostcases
plot_epicurve_ind map_burden table_10incidence
plot_epicurve_epidouble map_trend table_10percentchange
plot_epicurve_dailydouble map_vaccinations table_10vaccinations
plot_riskmatrix table_countriesofconcern
plot_vaxcoverage
plot_vaxcoverage_pop
plot_vaxcurve

Public Domain Standard Notice

This repository constitutes a work of the United States Government and is not subject to domestic copyright protection under 17 USC § 105. This repository is in the public domain within the United States, and copyright and related rights in the work worldwide are waived through the CC0 1.0 Universal public domain dedication. All contributions to this repository will be released under the CC0 dedication. By submitting a pull request you are agreeing to comply with this waiver of copyright interest.

License Standard Notice

The repository utilizes code licensed under the terms of the Apache Software License and therefore is licensed under ASL v2 or later. This source code in this repository is free: you can redistribute it and/or modify it under the terms of the Apache Software License version 2, or (at your option) any later version. This source code in this repository is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the Apache Software License for more details. You should have received a copy of the Apache Software License along with this program. If not, see http://www.apache.org/licenses/LICENSE-2.0.html The source code forked from other open source projects will inherit its license.

Privacy Standard Notice

This repository contains only non-sensitive, publicly available data and information. All material and community participation is covered by the Disclaimer and Code of Conduct. For more information about CDC’s privacy policy, please visit http://www.cdc.gov/other/privacy.html.

Contributing Standard Notice

Anyone is encouraged to contribute to the repository by forking and submitting a pull request. (If you are new to GitHub, you might start with a basic tutorial.) By contributing to this project, you grant a world-wide, royalty-free, perpetual, irrevocable, non-exclusive, transferable license to all users under the terms of the Apache Software License v2 or later. All comments, messages, pull requests, and other submissions received through CDC including this GitHub page may be subject to applicable federal law, including but not limited to the Federal Records Act, and may be archived. Learn more at http://www.cdc.gov/other/privacy.html.

Records Management Standard Notice

This repository is not a source of government records, but is a copy to increase collaboration and collaborative potential. All government records will be published through the CDC web site.

Additional Standard Notices

Please refer to CDC’s Template Repository for more information about contributing to this repository, public domain notices and disclaimers, and code of conduct.