Get site to subpopulation map

Get site to subpopulation map

Usage

get_site_subpop_spine(input_ww_data, input_count_data)

Arguments

input_ww_data

a dataframe of the wastewater data to be passed directly to stan, must have the following columns: date, site, lab, genome_copies_per_ml, site_pop, below_lod, and exclude

input_count_data

a dataframe of the count data to be passed directly to stan, , must have the following columns: date, count, total_pop

Value

a dataframe mapping the sites to the corresponding subpopulation and subpopulation index, plus the population in each subpopulation. Imposes the logic to add a subpopulation if the total population is greater than the sum of the site populations in the input wastewater data