Downsample the predicted wastewater concentrations based on the lab site reporting frequency and lab site reporting latencyy
Source:R/model_component_fwd_sim.R
downsample_ww_obs.RdDownsample the predicted wastewater concentrations based on the lab site reporting frequency and lab site reporting latencyy
Usage
downsample_ww_obs(
log_conc_lab_site,
n_lab_sites,
ot,
ht,
nt,
lab_site_reporting_freq,
lab_site_reporting_latency
)Arguments
- log_conc_lab_site
The matrix of n_lab_sites by n time points indicating the underlying expected observed concentrations
- n_lab_sites
Integer indicating the number of unique lab-site combinations
- ot
integer indicating the number of days we will have observed data for in the calibration period
- ht
integer indicating the time after the last observed time to
- nt
integer indicating the time after the last observed epi indicator and before the forecast date, of which there can still be wastewater observations
- lab_site_reporting_freq
vector indicating the mean frequency of wastewater measurements in each site per day (e.g. 1/7 is once per week)
- lab_site_reporting_latency
vector indicating the time from forecast date to last wastewater sample collection date in each lab-site