Get the formating of the stan data needed for the site level model, where we can observe WW observations on any day and multiple per day across different sites
Usage
get_stan_data_site_level_model(
train_data,
params,
forecast_date,
forecast_time,
model_type,
generation_interval,
inf_to_hosp,
infection_feedback_pmf,
include_hosp = 1,
compute_likelihood = 1,
...
)Arguments
- generation_interval
vector of discretized probability mass indexed starting at day 1 after infection, describing the probability of onwards infection on each day after infection
- inf_to_hosp
vector of discretized probability mass describing the probability of hopsital admissions on each day of infection, indexed starting at 0
- infection_feedback_pmf
vector of discretized probability mass used to enforce the delay distribution on infection feedback
- ...