Plot of draws for a single forecast date, with optional groupings

Usage

get_plot_draws(
  df,
  y,
  figure_file_path,
  log_scale = FALSE,
  grouping_var = NA,
  from_full_df = FALSE,
  days_pre_forecast_date_plot = 90,
  write_files = TRUE,
  show_calibration_data = FALSE,
  show_median = FALSE
)

Arguments

df: dataframe either containing filepaths to load in model draws or dataframe of model draws with data. Expected columns are: name, t, value, draw, include_ww, forecast_date, hosp_reporting_delay, location, date, daily_hosp_admits, daily_hosp_admits_for_eval, obs_data, period, model_type
y: outcome variable for the y-axis of plots, options are 'pred_hosp' and 'pred_ww'
figure_file_path: directory to save the figure
log_scale: whether or not to transform the y-axis to log scale, default is FALSE
grouping_var: what to group by, default is NA, options are 'model_type' and 'location'
from_full_df: if TRUE, df is a draws dataframe, if FALSE, df is a data frame of filepaths
days_pre_forecast_date_plot: how many days to show the calibration data default is 90
write_files: whether or not to write files to the path, default is TRUE
show_calibration_data: whether or not to show the data the model was calibrated to, which might be different from the eval data. Default is false
show_median: whether or not to show the median across all draws, default is false

Value

plot object