Skip to contents

Timeliness intervals of samples at the country level

generate_ctry_timeliness_graph.Rd

A stacked horizontal bar graph for timeliness intervals of samples at the country level. To get the full intervals from field to lab, the lab data needs to be attached. Otherwise, only the timeliness intervals from the field up to when it was sent to lab will be displayed.

Usage

generate_ctry_timeliness_graph(
  int.data,
  output_path = Sys.getenv("DR_FIGURE_PATH"),
  afp.year.lab = lifecycle::deprecated()
)

Arguments

int.data

tibble Summary table with timeliness intervals at the country level.

output_path

str Path where to output the figure.

afp.year.lab

tibble [Deprecated] Deprecated since it is not used anymore.

Value

ggplot Plot of timeliness intervals at the country level.

See also

generate_int_data()

Examples

if (FALSE) { # \dontrun{
# Attaching lab data
lab_path <- "C:/Users/ABC1/Desktop/algeria_lab_data.csv"
ctry.data <- init_dr("algeria", lab_data_path = lab_path)
lab.timeliness.ctry <- generate_lab_timeliness(ctry.data$lab.data, "ctry", start_date, end_date)
int.data.ctry <- generate_int_data(ctry.data, start_date, end_date,
  spatial.scale = "ctry",
  lab.timeliness.ctry
)
generate_ctry_timeliness_graph(int.data.ctry)
} # }