Summary of lab sample timeliness — generate_lab_timeliness • sirfunctions

Generates a summary of the timeliness of samples for specific intervals.

Usage

generate_lab_timeliness(
  lab_data,
  spatial.scale,
  start_date,
  end_date,
  start.date = lifecycle::deprecated(),
  end.date = lifecycle::deprecated()
)

Arguments

lab_data: tibble Lab data. Ensure that this lab data is cleaned using clean_lab_data() before running the function.
spatial.scale: str Spatial scale to analyze the data. Valid values are "ctry", "prov", "all".
start_date: str Start date of analysis.
end_date: str End date of analysis.
start.date: str renamed in favor of start_date.
end.date: str renamed in favor of end_date.

Value

tibble A table with timeliness data summary.

Examples

if (FALSE) { # \dontrun{
lab_path <- "C:/Users/XRG9/lab_data_who.csv"
ctry.data <- init_dr("algeria", lab_data_path = lab_path)
ctry.data$lab_data <- clean_lab_data(ctry.data, "2021-01-01", "2023-12-31")
lab.timeliness.ctry <- generate_lab_timeliness(ctry.data$lab_data, "ctry", start_date, end_date)
} # }