Get PRISM activity level cutpoints for given diseases and locations
Source:R/categorize_prism.R
get_prism_cutpoints.Rd
Get PRISM activity level cutpoints for given diseases and locations
Arguments
- locations
location(s) for which to return the cutpoints. A location two-letter abbreviation as in the
short_name
column of us_location_table, or an array of those abbreviations.- diseases
disease(s) for which to return the cutpoints. One of
"ARI"
,"COVID-19"
,"Influenza"
, or"RSV"
, or an array of those values.
Examples
get_prism_cutpoints("WA", "Influenza")
#> [[1]]
#> prop_lower_bound prop_low prop_moderate prop_high
#> 0.000000000 0.002593097 0.030257486 0.057921875
#> prop_very_high prop_upper_bound
#> 0.085586264 1.000000000
#>
get_prism_cutpoints(c("US", "WA"), "COVID-19")
#> [[1]]
#> prop_lower_bound prop_low prop_moderate prop_high
#> 0.000000000 0.006015091 0.017041933 0.028068775
#> prop_very_high prop_upper_bound
#> 0.039095617 1.000000000
#>
#> [[2]]
#> prop_lower_bound prop_low prop_moderate prop_high
#> 0.000000000 0.008711154 0.022004050 0.035296947
#> prop_very_high prop_upper_bound
#> 0.048589843 1.000000000
#>
get_prism_cutpoints(c("US", "WA"), c("ARI", "RSV"))
#> [[1]]
#> prop_lower_bound prop_low prop_moderate prop_high
#> 0.0000000 0.1046484 0.1381816 0.1717147
#> prop_very_high prop_upper_bound
#> 0.2052479 1.0000000
#>
#> [[2]]
#> prop_lower_bound prop_low prop_moderate prop_high
#> 0.0000000000 0.0004551485 0.0061158985 0.0117766486
#> prop_very_high prop_upper_bound
#> 0.0174373986 1.0000000000
#>