Format Stan options for input to EpiNow2

Format configuration sampler_opts for input to EpiNow2 via a call to EpiNow2::stan_opts().

Usage

format_stan_opts(sampler_opts, seed)

Arguments

sampler_opts

A list. The Stan sampler options to be passed through EpiNow2. It has required keys: cores, chains, iter_warmup, iter_sampling, max_treedepth, and adapt_delta.

seed

A stochastic seed passed here to the Stan sampler and as the R PRNG seed for EpiNow2 initialization

Value

A stan_opts object of arguments

See also

Other pipeline: fit_model(), orchestrate_pipeline()