Process BRMS log-linear fits of recent trends

Usage

process_recent_trend_fits(
  hosp_fit,
  ww_fit,
  forecast_date,
  location,
  scenario,
  processed_output_dir,
  figure_ext = "pdf",
  n_lab_sites_plot = 10,
  max_rhat = 1.02,
  min_neff_ratio = 0.05,
  max_frac_divergent = 0.05
)

Arguments

hosp_fit: brms::brmsfit object for the hospital admissions trend.
ww_fit: brms::brmsfit object for the wastewater trend.
forecast_date: forecast_date for the trend fits.
location: Location for the trend fits.
scenario: Wastewater data availability scenario for the trend fits.
processed_output_dir: Base directory for processed output (processed output will be saved in a subdirectory specific to the forecast_date, location and scenario. See forecast_output_path().
figure_ext: File extension for figures, without the ., e.g. "pdf" or "png". Default "pdf".
n_lab_sites_plot: Maximum number of lab-sites for which to plot wastewater trends. Default 10.
max_rhat: maximum allowable r-hat value. Default 1.01
min_neff_ratio: maximum allowable ratio of effective sample size to nominal sample size. Default 0.1.
max_frac_divergent: maximum allowable fraction of divergent transitions. Default 0.01 (1%).

Value

NULL, invisibly saving postprocessing results to disk as a side effect.