Get input wastewater data
Usage
get_input_ww_data(
forecast_date_i,
location_i,
scenario_i,
scenario_dir,
ww_data_dir,
calibration_time,
last_hosp_data_date,
ww_data_mapping,
for_eval = FALSE
)Arguments
- forecast_date_i
The forecast date for this iteration, formatted as a character string in IS08601 format (YYYY-MM-DD).
- location_i
The location (state or other jurisdiction) for this iteration, formatted as a string (uppercase USPS two-letter abbreviation, e.g. AK for Alaska, DC for the District of Columbia, PR for Puerto Rico).
- scenario_i
The scenario for this iteration, formatted as a string
- scenario_dir
A string indicating the path to the directory containing the csvs with the wwtp ids needed for each scenario
- ww_data_dir
A string indicating the path to the directory containing time stamped wastewater datasets
- calibration_time
The duration of the model calibration period (relative to the last hospital admissions data point) in units of model timesteps (typically days).
- last_hosp_data_date
A date indicating the date of last reported hospital admission as of the forecast date
- ww_data_mapping
A string indicating how to map the forecast date to the wastewater dates (see
date_of_ww_data()for more details)- for_eval
A boolean indicating whether the hospital admissions data is for evaluation. Default is FALSE which means it will be used to fit a single model, TRUE means we will combine with multiple locations and a longer time span than we would fit to.