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Generate a log of potential errors in the lab data

lab_data_errors.Rd

Checks the loaded lab data for potential issues. The function will detect whether the lab data loaded either came from the regional office or from global.

Usage

lab_data_errors(
  lab.data,
  afp.data,
  start.date = start_date,
  end.date = end_date,
  ctry_name = Sys.getenv("DR_COUNTRY"),
  error_path = Sys.getenv("DR_ERROR_PATH"),
  ctry.data = lifecycle::deprecated()
)

Arguments

lab.data

tibble Polio lab data.

afp.data

tibble AFP linelist.

start.date

str Start date of the analysis.

end.date

str End date of the analysis.

ctry_name

list or str A name of a country or a list of countries. Please pass lab data directly into lab.data parameter instead.

error_path

str File path to store the error log.

ctry.data

list [Deprecated]

Value

None. It outputs locally an Excel file containing the error log.

Examples

if (FALSE) { # \dontrun{
lab_path <- "C:/Users/ABC1/Desktop/lab_data.xlsx"
start_date <- "2021-01-01"
end_date <- "2023-12-31"
ctry.data <- init_dr("algeria", lab_data_path = lab_path)
lab_data_errors(ctry.data$lab.data, ctry.data$afp.data)
} # }