Laboratory surveillance KPIs — generate_c4_table • sirfunctions

Summarizes the timeliness of samples as it arrives in the lab and to sequencing results. Samples may come from both AFP and ES samples.

Usage

generate_c4_table(lab_data, afp_data, start_date, end_date)

Arguments

lab_data: tibble Lab data containing information of ES or AFP samples.
afp_data: tibble AFP surveillance data.
start_date: str Start date of the analysis in YYYY-MM-DD format.
end_date: str End date of the analysis in YYYY-MM-DD format.

Value

list A summary of timeliness KPIs for lab data.

Examples

if (FALSE) { # \dontrun{
raw_data <- get_all_polio_data(attach.spatial.data = FALSE)
lab_data <- readr::read_csv("C:/Users/ABC1/Desktop/lab_data.csv")
c4 <- generate_c4_table(lab_data, raw_data$afp, "2021-01-01", "2024-12-31")
} # }