Environmental surveillance KPIs by site — generate_c3

Environmental surveillance KPIs summarized by site.

Usage

generate_c3_table(
  es_data,
  start_date,
  end_date,
  risk_category = NULL,
  lab_locs = NULL,
  risk_table = NULL
)

Arguments

es_data: tibble Environmental surveillance data.
start_date: str Start date of the analysis in YYYY-MM-DD format.
end_date: str End date of the analysis in YYYY-MM-DD format.
risk_category: str Risk category or a list of categories. Defaults to NULL. Valid values are: "LOW, LOW (WATCHLIST), MEDIUM, HIGH.
lab_locs: tibble Summary of the sequencing capacities of labs. Output of get_lab_locs(). Defaults to NULL, which will download the information directly from EDAV. .
risk_table: tibble Priority level of each country. Defaults to NULL, which will download the information directly from EDAV.

Value

tibble A summary table of environmental surveillance KPIs.

Examples

if (FALSE) { # \dontrun{
raw_data <- get_all_polio_data(attach.spatial.data = FALSE)
c3 <- generate_c3_table(raw_data$es, "2021-01-01", "2023-12-31")
} # }