AFP surveillance KPI summary — generate_c2

This function creates a summary table of AFP surveillance KPIs.

Usage

generate_c2_table(
  afp_data,
  pop_data,
  start_date,
  end_date,
  spatial_scale,
  risk_category = NULL,
  lab_locs = NULL,
  risk_table = NULL
)

Arguments

afp_data: tibble AFP linelist data.
pop_data: tibble Population data.
start_date: str Start date of the analysis in YYYY-MM-DD format.
end_date: str End date of the analysis in YYYY-MM-DD format.
spatial_scale: str Either "ctry", "prov", "dist".
risk_category: str Risk category or a list of categories. Defaults to NULL. Valid values are: "LOW, LOW (WATCHLIST), MEDIUM, HIGH.
lab_locs: tibble Summary of the sequencing capacities of labs. Output of get_lab_locs(). Defaults to NULL, which will download the information directly from EDAV. .
risk_table: tibble Priority level of each country. Defaults to NULL, which will download the information directly from EDAV.

Value

tibble Summary table containing AFP KPIs.

Examples

if (FALSE) { # \dontrun{
raw_data <- get_all_polio_data(attach.spatial.data = FALSE)
c2 <- generate_c2_table(raw_data$afp, raw_data$ctry.pop, "2021-01-01", "2023-12-31", "ctry")
} # }