AFP case map — generate_afp_case_map • sirfunctions

Generates a map of AFP cases, excluding any with pending classification.

Usage

generate_afp_case_map(
  afp.all,
  ctry.shape,
  prov.shape,
  start_date,
  end_date = lubridate::today(),
  output_path = Sys.getenv("DR_FIGURE_PATH")
)

Arguments

afp.all: sf AFP linelist containing point geometry. This is ctry.data$afp.all, which is an output of either extract_country_data() and init_dr().
ctry.shape: sf Country shapefile in long format.
prov.shape: sf Province shapefile in long format.
start_date: str Start date of analysis.
end_date: str End date of analysis. Default is today's date.
output_path: str Local path where to save the figure to.

Value

ggplot Map of AFP cases.

See also

load_clean_ctry_sp(), load_clean_prov_sp()

Examples

if (FALSE) { # \dontrun{
ctry.data <- init_dr("algeria")
ctry.shape <- load_clean_ctry_sp(ctry_name = "ALGERIA", type = "long")
prov.shape <- load_clean_prov_sp(ctry_name = "ALGERIA", type = "long")
generate_afp_case_map(ctry.data, ctry.shape, prov.shape, "2023-12-31")
} # }