Fix unknown GUIDs in the AFP linelist

Fix unknown GUIDs in the AFP linelist by obtaining GUIDs found in the pop files. It attempts to replace the unknown GUIDs from the AFP linelist by using geographic info for a specific year that coincides with the case date and uses the GUIDs contained in the current spatial data instead.

Usage

fix_ctry_data_missing_guids(afp.data, pop.data, guid_list, spatial_scale)

Arguments

afp.data

tibble AFP linelist (afp.all.2).

pop.data

tibble Population file (prov.pop or dist.pop).

guid_list

str list Unknown GUIDs from the AFP linelist. This is the output of check_afp_guid_ctry_data().

spatial_scale

str The spatial scale to impute data. Either "prov" or "dist".

Value

tibble AFP data with corrected GUIDs based on the population files.

Examples

if (FALSE) { # \dontrun{
raw.data <- get_all_polio_data()
ctry.data <- extract_country_data("algeria", raw.data)
error.list <- check_afp_guid_ctry_data(ctry.data)
ctry.data$afp.all.2 <- fix_ctry_data_missing_guids(
  ctry.data$afp.all.2,
  ctry.data$dist.pop,
  error.list$dist_mismatches_pop,
  "dist"
)
} # }