Export the AFP linelist — create_afp

Export the AFP linelist with adequacy.final2 column. The adequacy.final2 column describes the status of a stool sample, such as if a stool sample is adequate or inadequate. Specifically, it is created from generate_stool_data() which takes parameters on how to deal with missing or inadequate stool samples.

Usage

create_afp_export(
  stool.data,
  country = Sys.getenv("DR_COUNTRY"),
  excel_output_path = Sys.getenv("DR_TABLE_PATH")
)

Arguments

stool.data: tibble AFP data with final adequacy columns. This is the output of generate_stool_data().
country: str Name of the country.
excel_output_path: str Output path of the Excel file.

Value

None.

Examples

if (FALSE) { # \dontrun{
ctry.data <- init_dr("algeria")
stool.data <- generate_stool_data(
  ctry.data$afp.all.2, "good", "inadequate",
  "2021-01-01", "2023-12-31"
)
create_afp_export(stool.data)
} # }