Lab Year Over Year Trends

name: lab_yoy_trend
fullname: Lab Year Over Year Trends
description: >
  Generates a trend report of testing volume and the percent of 
  tests that are positive for all Lab A LabCategory 2 
  options in the ESSENCE Laboratory by Results data source. 
  Original Code By: Dylan Johns & Kelly Carey. 
  Adapted to the Rnssp Package by: Gbedegnon Roseric Azondekon. 
  National Syndromic Surveillance Program (NSSP). 
  Centers for Disease Control and Prevention (CDC).  
create_dir: true

Detailed Description

This template generates a trend report of testing volume and the percent of tests that are positive for all Lab A LabCategory 2 options in the ESSENCE Laboratory by Results data source. Users are able to select a time period and geographic region (national, HHS Region, state, or county).

User Inputs

• NSSP Username: NSSP ESSENCE account username
• NSSP Password: NSSP account password
• Start Date: Start date (February 1, 2019 or later)
• End Date: End date
• Lab Category 1 Selections: Laboratory category 1 options to be included in the report.
• Geographic Region: Geographic region. Can be national, HHS Region, or state.
• User Selected County: A Laboratory by Results (Full Details) ESSENCE API with the county or counties of interest selected. Overwrites site parameter to run the report for a specific facility.
• User Selected County Label: Label the report with the county name(s).

Output

When knit with parameters, this template generates a report in HTML format.

Add this template

# Add `lab_yoy_trend` to my existing Rnssp installation
Rnssp::add_rmd_template("lab_yoy_trend")

Remove this template

# Remove `lab_yoy_trend` from my existing Rnssp installation
Rnssp::remove_rmd_template("lab_yoy_trend")

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