R code and data to conduct the analysis of antimicrobial-resistant E. coli in river water that is reported in:
Holcomb DA, Cantrell ME, Feistel DJ, Meyer M, Sterling J, Chen J, Krishnan K, Im S, Folster JP, Kim J, Burroughs M, Nobles S, Stahl A, Mattioli MC. (2026). Environmental monitoring for antimicrobial resistance in a metropolitan watershed. Journal of Water and Health https://doi.org/10.2166/wh.2026.219
Wastewater outfall information (XLSX)
Drainage basin polygons (zipped SHP)
Stream network vectors (zipped SHP)
Org: Division of Foodborne, Waterborne, and Environmental Diseases
Version: 1.4
Status: Maintained
Keywords: antimicrobial resistance, surface water, environmental monitoring, E. coli, whole-genome sequencing, spatial stream network model
Contact Email: ncezid_shareit@cdc.gov